plotProfiles: Produce a TSS plot of the two conditions in the data

In DChIPRep: DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

Description

This function plots the positionwise mean of the log2 of the normalized counts of the two conditions after runTesting has been run on a DChIPRepResults object.

Usage

## S4 method for signature 'DChIPRepResults'
plotProfiles(object, meanFunction = robust_mean,
  ...)

Arguments

object	a DChIPRepResults object after runTesting
meanFunction	a function to compute the positionwise mean per group, defaults to a Huber estimator of the mean.
...	additional parametes for plotting (NOT YET IMPLEMENTED)

Value

a ggplot2 object

Examples

if (requireNamespace("mgcv", quietly=TRUE)) {
data(testData)
dcr <- DChIPRepResults(testData)
dcr <- runTesting(dcr)
plotProfiles(dcr)
}

DChIPRep documentation built on April 29, 2020, 4:26 a.m.