annLoi2008: Annotation data used in the DEGraph package vignette

In DEGraph: Two-sample tests on a graph

Description

This data set gives NCBI, Hugo and alternative gene symbols along with the cytoband and description for the 227 genes used in the DEGraph package vignette. This comes from the 15737 gene, 255 patient dataset of Loi et al. (2008) which was used to study resistance to tamoxifen treatment in hormone-dependent breast cancer.

Usage

annLoi2008

Format

A matrix of 227 lines and 5 columns.

Author(s)

Laurent Jacob, Pierre Neuvial and Sandrine Dudoit

Source

Loi et al., Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen. BMC Genomics, 9(1):239, 2008.

References

Loi et al., Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen. BMC Genomics, 9(1):239, 2008.

Examples

data("Loi2008_DEGraphVignette")

dim(annLoi2008)
head(annLoi2008)

DEGraph documentation built on Nov. 8, 2020, 5:52 p.m.