API for DEP
Differential Enrichment analysis of Proteomics data

Global functions
.onLoad	Source code
DEP	Man page
DEP-package	Man page
DiUbi	Man page
DiUbi_ExpDesign	Man page
LFQ	Man page Source code
TMT	Man page Source code
UbiLength	Man page
UbiLength_ExpDesign	Man page
add_rejections	Man page
analyze_dep	Man page Source code
delete_prefix	Source code
delete_suffix	Source code
filter_missval	Man page Source code
filter_proteins	Man page Source code
get_annotation	Source code
get_df_long	Man page
get_df_wide	Man page
get_prefix	Man page Source code
get_results	Man page
get_suffix	Man page Source code
import_IsobarQuant	Man page Source code
import_MaxQuant	Man page Source code
impute	Man page Source code
make_se	Man page Source code
make_se_parse	Man page Source code
make_unique	Man page Source code
manual_impute	Man page Source code
meanSdPlot	Man page Source code
normalize_vsn	Man page Source code
plot_all	Man page Source code
plot_cond	Man page Source code
plot_cond_freq	Man page Source code
plot_cond_overlap	Man page Source code
plot_cor	Man page Source code
plot_coverage	Man page Source code
plot_detect	Man page Source code
plot_dist	Man page Source code
plot_frequency	Man page Source code
plot_gsea	Man page Source code
plot_heatmap	Man page Source code
plot_imputation	Man page Source code
plot_missval	Man page Source code
plot_normalization	Man page Source code
plot_numbers	Man page Source code
plot_p_hist	Man page
plot_pca	Man page Source code
plot_single	Man page Source code
plot_volcano	Man page
process	Man page Source code
report	Man page Source code
run_app	Man page Source code
se2msn	Man page Source code
test_diff	Man page Source code
test_gsea	Man page Source code
theme_DEP1	Man page Source code
theme_DEP2	Man page Source code