make_unique: Make unique names

In DEP: Differential Enrichment analysis of Proteomics data

Description

make_unique generates unique identifiers for a proteomics dataset based on "name" and "id" columns.

Usage

make_unique(proteins, names, ids, delim = ";")

Arguments

proteins	Data.frame, Protein table for which unique names will be created.
names	Character(1), Name of the column containing feature names.
ids	Character(1), Name of the column containing feature IDs.
delim	Character(1), Sets the delimiter separating the feature names within one protein group.

Value

A data.frame with the additional variables "name" and "ID" containing unique names and identifiers, respectively.

Examples

# Load example
data <- UbiLength

# Check colnames and pick the appropriate columns
colnames(data)
data_unique <- make_unique(data, "Gene.names", "Protein.IDs", delim = ";")

DEP documentation built on Nov. 8, 2020, 7:49 p.m.