theme_DEP1: DEP ggplot theme 1

In DEP: Differential Enrichment analysis of Proteomics data

Description

theme_DEP1 is the default ggplot theme used for plotting in DEP with horizontal x-axis labels.

Usage

theme_DEP1()

Value

ggplot theme

Examples

data <- UbiLength
data <- data[data$Reverse != '+' & data$Potential.contaminant != '+',]
data_unique <- make_unique(data, 'Gene.names', 'Protein.IDs', delim = ';')

columns <- grep('LFQ.', colnames(data_unique))
exp_design <- UbiLength_ExpDesign
se <- make_se(data_unique, columns, exp_design)

filt <- filter_missval(se, thr = 0)
plot_frequency(filt) # uses theme_DEP1() style

DEP documentation built on Nov. 8, 2020, 7:49 p.m.