fitInfo: Accessor function for the fitInfo objects in a CountDataSet
In DESeq: Differential gene expression analysis based on the negative binomial distribution
Description
Usage
Arguments
Author(s)
See Also
Examples
View source: R/class_and_slots.R
Description
After calling estimateDispersions, a CountDataSet object
is populated with one or (in case of a “per-condition” estimation)
several fitInfo objects, which can be accessed with this function.
Usage
1
Arguments
cds
a CountDataSet
name
if estimateDispersion was called with method="per-condition"
a name hasd to specified. Try ls(cds@fitInfo.
Author(s)
Simon Anders, sanders@fs.tum.de
See Also
Examples
1
2
3
4
cds <- makeExampleCountDataSet()
cds <- estimateSizeFactors( cds )
cds <- estimateDispersions( cds )
str( fitInfo( cds ) )
DESeq documentation built on April 28, 2020, 6:37 p.m.
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Description Usage Arguments Author(s) See Also Examples
View source: R/class_and_slots.R
Description
After calling estimateDispersions, a CountDataSet object
is populated with one or (in case of a “per-condition” estimation)
several fitInfo objects, which can be accessed with this function.
Usage
1 |
Arguments
cds |
a CountDataSet |
name |
if |
Author(s)
Simon Anders, sanders@fs.tum.de
See Also
Examples
1 2 3 4 | cds <- makeExampleCountDataSet()
cds <- estimateSizeFactors( cds )
cds <- estimateDispersions( cds )
str( fitInfo( cds ) )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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