newCountDataSetFromHTSeqCount: Create a new CountDataSet from count files generated with...
In DESeq: Differential gene expression analysis based on the negative binomial distribution
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
Use this function to start a DESeq analysis if you used htseq-count
to count your reads.
Usage
1
newCountDataSetFromHTSeqCount(sampleTable, directory = ".")
Arguments
sampleTable
A data frame with three or more columns. Each row describes one sample.
The first column is the sample name, the seond column the file name of
the count file generated by htseq-count, and the remaining columns are
sample meta data. If the meta data consists of only a single column
(i.e., three columns in total), this is used as 'condition' factor.
directory
The directory relative to which the filenames are specified.
Value
A CountDataSet object.
Author(s)
Simon Anders
References
See http://www-huber.embl.de/users/anders/HTSeq/ for htseq-count.
See Also
DESeq documentation built on April 28, 2020, 6:37 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
Use this function to start a DESeq analysis if you used htseq-count to count your reads.
Usage
1 | newCountDataSetFromHTSeqCount(sampleTable, directory = ".")
|
Arguments
sampleTable |
A data frame with three or more columns. Each row describes one sample. The first column is the sample name, the seond column the file name of the count file generated by htseq-count, and the remaining columns are sample meta data. If the meta data consists of only a single column (i.e., three columns in total), this is used as 'condition' factor. |
directory |
The directory relative to which the filenames are specified. |
Value
A CountDataSet object.
Author(s)
Simon Anders
References
See http://www-huber.embl.de/users/anders/HTSeq/ for htseq-count.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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