AffineAlignObj-class: An S4 object for class AffineAlignObj
In DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
Description
Author(s)
See Also
Description
s is a point-wise similarity matrix between signalA and signalB.
Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback
matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path
of maximum cumulative score.
GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm.
indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative
alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3
Date: 2019-12-14
See Also
DIAlignR documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Author(s) See Also
Description
s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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