s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M,A,B are calculated from s for affine-alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by affine alignment algorithm. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.
Shubham Gupta, email@example.com
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
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