API for DMCHMM
Differentially Methylated CpG using Hidden Markov Model

Global functions
.EMHMM.M Source code
.HMMmcmc.M Source code
.cBSDMCs Source code
.cBSData Source code
.combine.BSDMCs Source code
.combine.BSData Source code
.findDMCs Source code
.manhattanDMCs Source code
.marglike Source code
.marglike.M Source code
.methHMEM Source code
.methHMMCMC Source code
.methLevels Source code
.methReads Source code
.methStates Source code
.methVars Source code
.onAttach Source code
.qqDMCs Source code
.readBismark Source code
.replace.methLevels Source code
.replace.methReads Source code
.replace.methStates Source code
.replace.methVars Source code
.replace.totalReads Source code
.runEM.M Source code
.runMCMC.M Source code
.totalReads Source code
.writeBED_BSDMCs Source code
.writeBED_BSData Source code
BSDMCs Man page
BSDMCs-class Man page
BSData Man page
BSData-class Man page
DMCHMM Man page
DMCHMM-package Man page
cBSDMCs Man page
cBSDMCs,matrix,matrix,matrix,matrix,matrix,GRanges-method Man page
cBSDMCs-method Man page
cBSData Man page
cBSData,matrix,matrix,GRanges-method Man page
cBSData-method Man page
combine Man page
combine,BSDMCs,BSDMCs-method Man page
combine,BSData,BSData-method Man page
combine-method Man page
data Man page
findDMCs Man page
findDMCs,BSDMCs-method Man page
findDMCs-method Man page
manhattanDMCs Man page
manhattanDMCs,BSDMCs-method Man page
manhattanDMCs-method Man page
methHMEM Man page
methHMEM,BSData-method Man page
methHMEM-method Man page
methHMMCMC Man page
methHMMCMC,BSDMCs-method Man page
methHMMCMC-method Man page
methLevels Man page
methLevels,BSDMCs-method Man page
methLevels-method Man page
methLevels<- Man page
methLevels<-,BSDMCs,matrix-method Man page
methReads Man page
methReads,BSDMCs-method Man page
methReads,BSData-method Man page
methReads-method Man page
methReads<- Man page
methReads<-,BSDMCs,matrix-method Man page
methReads<-,BSData,matrix-method Man page
methStates Man page
methStates,BSDMCs-method Man page
methStates-method Man page
methStates<- Man page
methStates<-,BSDMCs,matrix-method Man page
methVars Man page
methVars,BSDMCs-method Man page
methVars-method Man page
methVars<- Man page
methVars<-,BSDMCs,matrix-method Man page
params Man page
qqDMCs Man page
qqDMCs,BSDMCs-method Man page
qqDMCs-method Man page
readBismark Man page
readBismark,character,DataFrame,numeric-method Man page
readBismark,character,character,numeric-method Man page
readBismark,character,data.frame,numeric-method Man page
readBismark-method Man page
totalReads Man page
totalReads,BSDMCs-method Man page
totalReads,BSData-method Man page
totalReads-method Man page
totalReads<- Man page
totalReads<-,BSDMCs,matrix-method Man page
totalReads<-,BSData,matrix-method Man page
writeBED Man page
writeBED,BSDMCs,character,character-method Man page
writeBED,BSDMCs,character,missing-method Man page
writeBED,BSDMCs,missing,character-method Man page
writeBED,BSDMCs,missing,missing-method Man page
writeBED,BSData,character,character-method Man page
writeBED,BSData,character,missing-method Man page
writeBED,BSData,missing,character-method Man page
writeBED,BSData,missing,missing-method Man page
writeBED-method Man page
DMCHMM documentation built on Nov. 8, 2020, 8:20 p.m.