API for DMCHMM
Differentially Methylated CpG using Hidden Markov Model

Global functions
BSDMCs Man page
BSDMCs-class Man page
BSData Man page
BSData-class Man page
DMCHMM Man page
DMCHMM-package Man page
cBSDMCs Man page
cBSDMCs,matrix,matrix,matrix,matrix,matrix,GRanges-method Man page
cBSDMCs-method Man page
cBSData Man page
cBSData,matrix,matrix,GRanges-method Man page
cBSData-method Man page
combine Man page
combine,BSDMCs,BSDMCs-method Man page
combine,BSData,BSData-method Man page
combine-method Man page
data Man page
findDMCs Man page
findDMCs,BSDMCs-method Man page
findDMCs-method Man page
manhattanDMCs Man page
manhattanDMCs,BSDMCs-method Man page
manhattanDMCs-method Man page
methHMEM Man page
methHMEM,BSData-method Man page
methHMEM-method Man page
methHMMCMC Man page
methHMMCMC,BSDMCs-method Man page
methHMMCMC-method Man page
methLevels Man page
methLevels,BSDMCs-method Man page
methLevels-method Man page
methLevels<- Man page
methLevels<-,BSDMCs,matrix-method Man page
methReads Man page
methReads,BSDMCs-method Man page
methReads,BSData-method Man page
methReads-method Man page
methReads<- Man page
methReads<-,BSDMCs,matrix-method Man page
methReads<-,BSData,matrix-method Man page
methStates Man page
methStates,BSDMCs-method Man page
methStates-method Man page
methStates<- Man page
methStates<-,BSDMCs,matrix-method Man page
params Man page
qqDMCs Man page
qqDMCs,BSDMCs-method Man page
qqDMCs-method Man page
readBismark Man page
readBismark,character,DataFrame-method Man page
readBismark,character,character-method Man page
readBismark,character,data.frame-method Man page
readBismark-method Man page
totalReads Man page
totalReads,BSDMCs-method Man page
totalReads,BSData-method Man page
totalReads-method Man page
totalReads<- Man page
totalReads<-,BSDMCs,matrix-method Man page
totalReads<-,BSData,matrix-method Man page
writeBED Man page
writeBED,BSDMCs,character,character-method Man page
writeBED,BSDMCs,character,missing-method Man page
writeBED,BSDMCs,missing,character-method Man page
writeBED,BSDMCs,missing,missing-method Man page
writeBED,BSData,character,character-method Man page
writeBED,BSData,character,missing-method Man page
writeBED,BSData,missing,character-method Man page
writeBED,BSData,missing,missing-method Man page
writeBED-method Man page
DMCHMM documentation built on May 6, 2019, 2:08 a.m.