Description Usage Arguments Value Author(s) Examples
Returns totalReads
stored in BSData-class
Assigns totalReads
to BSData-class
Returns totalReads
stored in BSDMCs-class
Assigns totalReads
to BSDMCs-class
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | totalReads(object)
totalReads(object) <- value
totalReads(object)
totalReads(object) <- value
## S4 method for signature 'BSData'
totalReads(object)
## S4 replacement method for signature 'BSData,matrix'
totalReads(object) <- value
## S4 method for signature 'BSDMCs'
totalReads(object)
## S4 replacement method for signature 'BSDMCs,matrix'
totalReads(object) <- value
|
object |
A |
value |
An integer matrix |
A matrix
A BSData-class
object
A matrix
A BSDMCs-class
object
Farhad Shokoohi <shokoohi@icloud.com>
1 2 3 4 5 6 7 8 9 | nr <- 150; nc <- 8
metht <- matrix(as.integer(runif(nr * nc, 0, 100)), nr)
methc <- matrix(rbinom(n=nr*nc,c(metht),prob = runif(nr*nc)),nr,nc)
r1 <- GRanges(rep('chr1', nr), IRanges(1:nr, width=1), strand='*')
names(r1) <- 1:nr
cd1 <- DataFrame(Group=rep(c('G1','G2'),each=nc/2),row.names=LETTERS[1:nc])
OBJ1 <- cBSData(rowRanges=r1,methReads=methc,totalReads=metht,colData=cd1)
totalReads(OBJ1)
totalReads(OBJ1) <- metht
|
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