Files in DNAshapeR

High-throughput prediction of DNA shape features

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/properties.h

src/OptionParser.h

src/utilities.cpp

src/common.h

src/Output.cpp

src/prediction.h

src/TableCompiler.h

src/ReadData.h

src/RcppExports.cpp

src/map.cpp

src/utilities.h

src/OptionParser.cpp

src/ShapePrediction.cpp

src/map.h

src/properties.cpp

src/TableCompiler.cpp

src/Output.h

src/ReadData.cpp

src/SNP.h

src/SNP.cpp

src/prediction.cpp

R/getFasta.R R/core.R R/plotShape.R R/RcppExports.R R/getShape.R R/encodeSeqShape.R vignettes/DNAshapeR.Rmd man/normalizeShape.Rd man/normalize.Rd man/plotShape.Rd man/readNonStandardFastaFile.Rd man/encodeNstOrderShape.Rd man/readShape.Rd man/getShape.Rd man/DNAshapeR-package.Rd man/getFasta.Rd man/encodeKMerSeq.Rd man/encodeSeqShape.Rd man/heatShape.Rd man/trackShape.Rd man/encodeKmerHbond.Rd man/convertMethFile.Rd tests/testthat.R tests/testthat/test_read.R

inst/CITATION

inst/doc/DNAshapeR.R

inst/doc/DNAshapeR.html

inst/doc/DNAshapeR.Rmd

inst/extdata/CGRsample_short.fa

inst/extdata/PBMsample_short.fa

inst/extdata/PBMsample.s

inst/extdata/SingleSeqsample.fa.MGW

inst/extdata/PBMsample.fa

inst/extdata/SELEXsample_short.fa

inst/extdata/PBMsample_short.s inst/extdata/SELEXsample_short.s

inst/extdata/CGRsample.fa

inst/extdata/MethylSample.fa

inst/extdata/SELEXsample.s

inst/extdata/MethylSamplePos.fa

inst/extdata/SingleSeqsample.fa

inst/extdata/SELEXsample.fa

DNAshapeR documentation built on Nov. 8, 2020, 8:04 p.m.