|convertMethFile||Convert fasta file to methylated file format|
|DNAshapeR-package||DNAshapeR package for high-throughput prediction of DNA shape...|
|encodeKMerSeq||Encode k-mer DNA sequence features|
|encodeNstOrderShape||Encode n-st order shape features DNAshapeR can be used to...|
|encodeSeqShape||Encode k-mer DNA sequence and n-th order DNA Shape features|
|getFasta||Extract fasta sequence given a set of genomic intervals and a...|
|getShape||Predict DNA shape from a FASTA file|
|heatShape||Plot heatmap of DNA shape features|
|normalizeShape||Normalize n-st order shape features|
|plotShape||Plot metaprofiles of DNA shape features|
|readNonStandardFastaFile||Read the position fasta file|
|readShape||Read (parse) DNA shape predictions|
|trackShape||Plot track view of DNA shape features|
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