encodeNstOrderShape: Encode n-st order shape features DNAshapeR can be used to...
In DNAshapeR: High-throughput prediction of DNA shape features
Description
Usage
Arguments
Value
Author(s)
View source: R/encodeSeqShape.R
Description
Encode n-st order shape features
DNAshapeR can be used to generate feature vectors for a user-defined model.
The model can be a shape model. There are four structural parameters
including MGW, Roll, ProT and HelT. The second order shape features are
product terms of values for the same category of shape features at adjacent
positions.
Usage
1
encodeNstOrderShape(n, shapeMatrix, shapeType)
Arguments
n
A number indicating n-st order shape encoding
shapeMatrix
A matrix containing DNAshape prediction result
shapeType
A character name of shape (MGW, Roll, ProT, HelT) features
Value
featureVector A matrix containing encoded features. shape feature is
represented as continuous numbers
Author(s)
Tsu-Pei Chiu
DNAshapeR documentation built on Nov. 8, 2020, 8:04 p.m.
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Description Usage Arguments Value Author(s)
View source: R/encodeSeqShape.R
Description
Encode n-st order shape features DNAshapeR can be used to generate feature vectors for a user-defined model. The model can be a shape model. There are four structural parameters including MGW, Roll, ProT and HelT. The second order shape features are product terms of values for the same category of shape features at adjacent positions.
Usage
1 | encodeNstOrderShape(n, shapeMatrix, shapeType)
|
Arguments
n |
A number indicating n-st order shape encoding |
shapeMatrix |
A matrix containing DNAshape prediction result |
shapeType |
A character name of shape (MGW, Roll, ProT, HelT) features |
Value
featureVector A matrix containing encoded features. shape feature is represented as continuous numbers
Author(s)
Tsu-Pei Chiu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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