DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.
|Author||Tsu-Pei Chiu and Federico Comoglio|
|Bioconductor views||DNA3DStructure Software StructuralPrediction|
|Date of publication||None|
|Maintainer||Tsu-Pei Chiu <firstname.lastname@example.org>|
DNAshapeR-package: DNAshapeR package for high-throughput prediction of DNA shape...
encodeKMerSeq: Encode k-mer DNA sequence features
encodeNstOrderShape: Encode n-st order shape features DNAshapeR can be used to...
encodeSeqShape: Encode k-mer DNA sequence and n-th order DNA Shape features
getFasta: Extract fasta sequence given a set of genomic intervals and a...
getShape: Predict DNA shape from a FASTA file
heatShape: Plot heatmap of DNA shape features
normalize: Min-Max normalization
normalizeShape: Normalize n-st order shape features
plotShape: Plot metaprofiles of DNA shape features
readShape: Read (parse) DNA shape predictions
trackShape: Plot track view of DNA shape features
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