cluster.strains: cluster.strains
In DOQTL: Genotyping and QTL Mapping in DO Mice
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Given a set of numeric SNPs, cluster the strains based on allele sharing. This function hierarchically clusters the strains based on the proportion of SNPs that share alleles between each strain. Note: numeric snps, not character snps, are the input to this function.
Usage
1
cluster.strains(variants)
Arguments
variants
data.frame, numeric variants as returned by convert.variants.to.numeric.
Value
data.frame: of numeric variants with the strains clustered.
Author(s)
Daniel Gatti
See Also
convert.variants.to.numeric, variant.plot
Examples
1
2
3
data(example.snps)
variants = convert.variants.to.numeric(variants = example.snps[1:100,])
variants = cluster.strains(variants)
DOQTL documentation built on May 6, 2019, 3:09 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Given a set of numeric SNPs, cluster the strains based on allele sharing. This function hierarchically clusters the strains based on the proportion of SNPs that share alleles between each strain. Note: numeric snps, not character snps, are the input to this function.
Usage
1 | cluster.strains(variants)
|
Arguments
variants |
data.frame, numeric variants as returned by |
Value
data.frame: of numeric variants with the strains clustered.
Author(s)
Daniel Gatti
See Also
convert.variants.to.numeric, variant.plot
Examples
1 2 3 | data(example.snps)
variants = convert.variants.to.numeric(variants = example.snps[1:100,])
variants = cluster.strains(variants)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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