example.qtl: Example QTL.

In DOQTL: Genotyping and QTL Mapping in DO Mice

Description

Example QTL for the albino and HDLD2 traits in example.pheno. Albino is a binary, Mendelian trait that maps to the Tyrosinase locus on Chr 7. HDLD2 (high density lipoprotein) is a complex trait with many loci.

Usage

 example.qtl 

Format

A data frame with 149 observations on the following 8 variables. Sample IDs in rownames and phenotype names in colnames.

Sample

Character vector containing sample IDs.

Sex

Character vector containing the sex of each animal.

Gen

Character vector containing DO outbreeding generation and litter.

Diet

Character vector containing diet, either chow or hf for high fat.

Coat.Color

Character vector containing text description of mouse colors.

albino

Numeric vector contining 1 if the mouse's coat color was white.

black

Numeric vector contining 1 if the mouse's coat color was black.

HDLD2

Numeric vector of high density lipoprotein values.

Details

Data from Svenson et.al. paper below.

References

High-resolution genetic mapping using the Mouse Diversity outbred population. Svenson KL, Gatti DM, Valdar W, Welsh CE, Cheng R, Chesler EJ, Palmer AA, McMillan L, Churchill GA. Genetics. 2012 FALSEeb;190(2):437-47 PMID: 223445611

Examples

  names(example.qtl)
  names(example.qtl[[1]])

DOQTL documentation built on May 6, 2019, 3:09 a.m.