convert.variants.to.GRanges: convert.variants.to.GRanges
In DOQTL: Genotyping and QTL Mapping in DO Mice
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Given a data.frame of SNPs, convert the SNP locations to a GRanges object.
Usage
1
convert.variants.to.GRanges(variants)
Arguments
variants
Data frame with four header columns and SNPs in the remaining columns.
Details
This function creates a GRanges object from the CHR and POS columns of the SNP data.frame.
Value
GRanges object containing the SNP locations.
Author(s)
Daniel Gatti
Examples
1
2
data(example.snps)
gr = convert.variants.to.GRanges(example.snps[1:100,])
DOQTL documentation built on May 6, 2019, 3:09 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Given a data.frame of SNPs, convert the SNP locations to a GRanges object.
Usage
1 | convert.variants.to.GRanges(variants)
|
Arguments
variants |
Data frame with four header columns and SNPs in the remaining columns. |
Details
This function creates a GRanges object from the CHR and POS columns of the SNP data.frame.
Value
GRanges object containing the SNP locations.
Author(s)
Daniel Gatti
Examples
1 2 | data(example.snps)
gr = convert.variants.to.GRanges(example.snps[1:100,])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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