create.genotype.states: Create genotype states.

In DOQTL: Genotyping and QTL Mapping in DO Mice

Description

Given a set of founders, create all of the possible unphased genotype states between them.

Usage

  create.genotype.states(founders, sampletype = c("DO", "CC", "HS", "HSrat"))

Arguments

founders	Character vector of letter codes indicating the founders.
sampletype	Character string that is one of DO, HS, CC or HSrat.

Details

Given a set of founder IDs, create all possible unphased genotypes and sort them.

Value

Character vector of unphased genotypes that can be created from the given founders.

Author(s)

Daniel Gatti

Examples

  create.genotype.states(founders = LETTERS[1:8], sampletype = "DO")

DOQTL documentation built on May 6, 2019, 3:09 a.m.