DSS: Dispersion shrinkage for sequencing data

DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.

Package details

AuthorHao Wu<hao.wu@emory.edu>, Hao Feng<hxf155@case.edu>
Bioconductor views DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression RNASeq Sequencing
MaintainerHao Wu <hao.wu@emory.edu>, Hao Feng <hxf155@case.edu>
LicenseGPL
Version2.38.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DSS")

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DSS documentation built on Nov. 8, 2020, 7:44 p.m.