RRBS: An example dataset for multiple factor design
In DSS: Dispersion shrinkage for sequencing data

Description Usage Examples

The dataset contains RRBS data for 5000 CpG sites from 16 samples. The experimental design is provided in the 'design' data frame.

1	data("RRBS")

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data(RRBS)
RRBS
design

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    which.max, which.min

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Loading required package: bsseq
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Loading required package: splines
An object of type 'BSseq' with
  5000 methylation loci
  16 samples
has not been smoothed
All assays are in-memory
   case cell
1    HC   rN
2    HC   rN
3    HC   rN
4   SLE   aN
5   SLE   rN
6   SLE   aN
7   SLE   rN
8   SLE   aN
9   SLE   rN
10  SLE   aN
11  SLE   rN
12   HC   aN
13   HC   aN
14   HC   aN
15   HC   aN
16   HC   rN