This instance stores parameters and results of theDeMAND algorithm

`exp` |
A N by M numeric matrix and the rows are N probes and the columns are M samples. |

`anno` |
A N by 2 character matrix. The rows are probes but the order should be the same with the |

`network` |
A K by 4 character matrix which contains K interactions. The 1st column and the 2nd column contain pairs of interacted genes. The 3rd and 4th columns indicate whether the interactions are pr otein-protein interaction (ppi) or protein-DNA (pdi) interaction. Column name should be as follows: c("Gene1", "Gene2", "ppi", "pdi") |

`moa` |
A data frame contains DeMAND MoA predictions (e.g. Gene, p-value, adjusted p-values) |

`KLD` |
A matrix containing the KL-divergence of the interactions that were analysed, the KL-divergence that was evaluated, and the p-value associated with the divergenece |

DeMAND documentation built on Nov. 1, 2018, 3:47 a.m.

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