cisRun-class: Class '"cisRun"'

In GGtools: software and data for analyses in genetics of gene expression

Description

manage results of All.cis eQTL analysis

Objects from the Class

Objects can be created by calls of the form new("cisRun", ...).

Slots

seqnames:

Object of class "Rle" ~~

ranges:

Object of class "IRanges" – will document the range searched for each probe/gene – therefore the values returned are addresses of gene extent minus/plus radius at each end

strand:

Object of class "Rle" ~~

elementMetadata:

Object of class "DataFrame" ~~

seqinfo:

Object of class "Seqinfo" ~~

metadata:

Object of class "list" ~~

Extends

Class "GRanges", directly. Class "GenomicRanges", by class "GRanges", distance 2. Class "Vector", by class "GRanges", distance 3. Class "GenomicRanges_OR_missing", by class "GRanges", distance 3. Class "GenomicRanges_OR_GRangesList", by class "GRanges", distance 3. Class "Annotated", by class "GRanges", distance 4.

Methods

No methods defined with class "cisRun" in the signature.

Note

intent is to simplify output of cis eQTL testing in a GRanges instance

Author(s)

VJ Carey <[e-mail]>

Examples

showClass("cisRun")

GGtools documentation built on Nov. 8, 2020, 6:32 p.m.