strMultPop: serialization of a table from Stranger's multipopulation eQTL...

In GGtools: software and data for analyses in genetics of gene expression

Description

serialization of a table from Stranger's multipopulation eQTL report

Usage

data(strMultPop)

Format

A data frame with 39649 observations on the following 12 variables.

rsid

a factor with levels rs...

genesym

a factor with levels 37865 39692 ABC1 ABCD2 ABHD4 ACAS2 ...

illv1pid

a factor with levels GI_10047105-S GI_10092611-A GI_10190705-S GI_10567821-S GI_10835118-S GI_10835186-S ...

snpChr

a numeric vector

snpCoordB35

a numeric vector

probeMidCoorB35

a numeric vector

snp2probe

a numeric vector

minuslog10p

a numeric vector

adjR2

a numeric vector

assocGrad

a numeric vector

permThresh

a numeric vector

popSet

a factor with levels CEU-CHB-JPT CEU-CHB-JPT-YRI CHB-JPT

Details

imported from the PDF(!) distributed by Stranger et al as supplement to PMID 17873874

Source

PMID 17873874 supplement

References

PMID 17873874 supplement

Examples

data(strMultPop)
strMultPop[1:2,]

GGtools documentation built on Nov. 8, 2020, 6:32 p.m.