sensiCisOutput-class: Class '"sensiCisOutput"'

In GGtools: software and data for analyses in genetics of gene expression

Description

This class helps to manage the results from a collection of cis-eQTL searches.

Objects from the Class

Objects can be created by calls of the form new("sensiCisOutput", ...).

Slots

byGene:

Object of class "GRanges", organized to provide ranges for genes and their best associated cis SNP

bySNP:

Object of class "GRanges" organized to provide easy access to genomic coordinates of SNP found to be most strongly associated with a gene in cis

tabAtFDRB:

Object of class "ANY" a flattened table that defines tuning parameters and eQTL yield for a collection of searches

input:

Object of class "sensiCisInput" : object that describes the files and parameter settings used for the sensitivity analysis

thecall:

Object of class "call": the call generating this instance

fdrbound:

Object of class "numeric": gives the upper bound on FDR for declaring an eQTL

sessionInfo:

Object of class "ANY": describes state of system in which the object was made.

Methods

show

signature(object = "sensiCisOutput"): concise rendering with hints

Author(s)

VJ Carey <[e-mail]>

Examples

showClass("sensiCisOutput")

GGtools documentation built on Nov. 8, 2020, 6:32 p.m.