GLAD: Gain and Loss Analysis of DNA

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

AuthorPhilippe Hupe
Date of publicationNone
MaintainerPhilippe Hupe <glad@curie.fr>
LicenseGPL-2
Version2.38.0
http://bioinfo.curie.fr

View on Bioconductor

Files in this package

GLAD/CHANGELOG
GLAD/DESCRIPTION
GLAD/NAMESPACE
GLAD/R
GLAD/R/BkpInfo.R
GLAD/R/CheckData.R
GLAD/R/ChrNumeric.R GLAD/R/HaarSeg.R
GLAD/R/MoveBkp.R
GLAD/R/MoveBkpStep.R
GLAD/R/OutliersGNL.R
GLAD/R/affectationGNL.R
GLAD/R/arrayPlot.R
GLAD/R/as.profileCGH.R
GLAD/R/chrBreakpoints.R
GLAD/R/daglad.R
GLAD/R/detectOutliers.R
GLAD/R/filterBkp.R
GLAD/R/filterBkpStep.R
GLAD/R/findCluster.R
GLAD/R/glad.R
GLAD/R/hclust.R
GLAD/R/kernel.R
GLAD/R/laws-glad.R
GLAD/R/loopRemove.R
GLAD/R/plotCytoBand.R
GLAD/R/plotProfile.R
GLAD/R/tkdaglad.R GLAD/R/tkglad.R GLAD/R/zzz.R
GLAD/aclocal.m4
GLAD/build
GLAD/build/vignette.rds
GLAD/cleanup
GLAD/configure
GLAD/configure.ac
GLAD/configure.ac.old
GLAD/data
GLAD/data/arrayCGH.RData
GLAD/data/cytoband.RData
GLAD/data/snijders.RData
GLAD/data/veltman.RData
GLAD/demo
GLAD/demo/00Index
GLAD/demo/tkdaglad.R
GLAD/demo/tkglad.R
GLAD/inst
GLAD/inst/README
GLAD/inst/doc
GLAD/inst/doc/GLAD.R
GLAD/inst/doc/GLAD.Rnw
GLAD/inst/doc/GLAD.pdf
GLAD/man
GLAD/man/ChrNumeric.Rd GLAD/man/ColorBar.Rd GLAD/man/GLAD-internal.Rd GLAD/man/arrayCGH.Rd GLAD/man/arrayPersp.Rd GLAD/man/arrayPlot.Rd GLAD/man/as.data.frame.profileCGH.Rd GLAD/man/as.profileCGH.Rd GLAD/man/bladder.Rd GLAD/man/cytoband.Rd GLAD/man/daglad.Rd GLAD/man/glad.Rd GLAD/man/hclust.Rd GLAD/man/kernel.Rd GLAD/man/myPalette.Rd GLAD/man/plotProfile.Rd GLAD/man/profileCGH.Rd GLAD/man/snijders.Rd GLAD/man/tkdaglad.Rd GLAD/man/veltman.Rd
GLAD/src
GLAD/src/BkpInfo.cpp
GLAD/src/HaarSeg.cpp
GLAD/src/HaarSeg.h
GLAD/src/Makevars.in
GLAD/src/Makevars.win
GLAD/src/MoveBkp.cpp
GLAD/src/MoveBkp.h
GLAD/src/OutliersGNL.cpp
GLAD/src/chrBreakpoints.cpp
GLAD/src/chrBreakpoints.h
GLAD/src/cutree.cpp
GLAD/src/cutree.h
GLAD/src/daglad.cpp
GLAD/src/distance.cpp
GLAD/src/filterBkp.cpp
GLAD/src/filterBkp.h
GLAD/src/findCluster.cpp
GLAD/src/findCluster.h
GLAD/src/glad-limits.h
GLAD/src/glad-struct.h
GLAD/src/glad-utils.cpp
GLAD/src/glad-utils.h
GLAD/src/hclust.cpp
GLAD/src/laws.c
GLAD/src/laws.h
GLAD/src/loopRemove.cpp
GLAD/src/loopRemove.h
GLAD/src/mva.h
GLAD/vignettes
GLAD/vignettes/GLAD.Rnw
GLAD/vignettes/biblio.bib

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