arrayCGH: Object of Class arrayCGH

In GLAD: Gain and Loss Analysis of DNA

Description

Description of the object arrayCGH.

Value

The object arrayCGH is a list with at least a data.frame named arrayValues and a vector named arrayDesign. The data.frame arrayValues must contain the following fields :

Col	Vector of columns coordinates.
Row	Vector of rows coordinates.
...	Other elements can be added.

The vector arrayDesign is composed of 4 values : c(arrayCol, arrayRow, SpotCol, SpotRow). The array CGH is represented by arrayRow*arrayCol blocs and each bloc is composed of SpotRow*SpotCol spots.

N.B. : Col takes the values in 1:arrayRow*SpotRow and Row takes the values in 1:arrayCol*SpotCol

Note

People interested in tools dealing with array CGH analysis can visit our web-page http://bioinfo.curie.fr.

Author(s)

Philippe Hupé, [e-mail].

See Also

glad.

Examples

data(arrayCGH)

# object of class arrayCGH

array <- list(arrayValues=array2, arrayDesign=c(4,4,21,22))
class(array) <- "arrayCGH"

GLAD documentation built on Nov. 8, 2020, 11:10 p.m.