Files in GUIDEseq
GUIDE-seq analysis pipeline
NAMESPACE
DESCRIPTION
build/vignette.rds
data/peaks.gr.rda
data/uniqueCleavageEvents.rda
R/getPeaks.R
R/getUsedBarcodes.R
R/createBarcodeFasta.R
R/offTargetAnalysisOfPeakRegions.R
R/annotateOfftargets.R
R/combineOfftargets.R
R/getUniqueCleavageEvents.R
R/GUIDEseq-internal.R
R/GUIDEseqAnalysis.R
R/mergePlusMinusPeaks.R
vignettes/GUIDEseq.Rnw
man/getUsedBarcodes.Rd
man/combineOfftargets.Rd
man/annotateOffTargets.Rd
man/peaks.gr.Rd
man/offTargetAnalysisOfPeakRegions.Rd
man/mergePlusMinusPeaks.Rd
man/createBarcodeFasta.Rd
man/GUIDEseq-package.Rd
man/getUniqueCleavageEvents.Rd
man/GUIDEseqAnalysis.Rd
man/uniqueCleavageEvents.Rd
man/getPeaks.Rd
inst/NEWS
inst/CITATION
inst/doc/GUIDEseq.R
inst/doc/GUIDEseq.Rnw
inst/doc/GUIDEseq.pdf
inst/extdata/bowtie2.HEK293_site4_chr13.sort.bed
inst/extdata/bowtie2.HEK293_site4_chr13.sort.bam
inst/extdata/gRNA.fa
inst/extdata/T2.fa
inst/extdata/testPeaks.rda
inst/extdata/UMI-HEK293_site4_R1.txt
inst/extdata/bowtie2.HEK293_site4.sort.bed
inst/extdata/T2plus100OffTargets.bed
inst/extdata/testbothRunSum.rda
inst/extdata/p5.index
inst/extdata/p7.index
inst/extdata/UMI-HEK293_site4_chr13.txt
inst/extdata/sample1-17/offTargetsInPeakRegions.xls
inst/extdata/sample3-19/offTargetsInPeakRegions.xls
inst/extdata/sample6-22/offTargetsInPeakRegions.xls
inst/extdata/sample2-18/offTargetsInPeakRegions.xls
inst/extdata/sample4-20/offTargetsInPeakRegions.xls
inst/extdata/sample7-23/offTargetsInPeakRegions.xls
inst/extdata/sample5-21/offTargetsInPeakRegions.xls
