Files in GUIDEseq
GUIDE-seq analysis pipeline

DESCRIPTION
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/GUIDEseq.R
inst/doc/GUIDEseq.Rnw
inst/doc/GUIDEseq.pdf
inst/extdata/T2plus100OffTargets.bed
inst/extdata/p5.index
inst/extdata/p7.index
inst/extdata/testPeaks.rda
inst/extdata/UMI-HEK293_site4_chr13.txt
inst/extdata/bowtie2.HEK293_site4.sort.bed
inst/extdata/T2.fa
inst/extdata/bowtie2.HEK293_site4_chr13.sort.bed
inst/extdata/gRNA.fa
inst/extdata/testbothRunSum.rda
inst/extdata/bowtie2.HEK293_site4_chr13.sort.bam
inst/extdata/UMI-HEK293_site4_R1.txt
inst/extdata/sample4-20/offTargetsInPeakRegions.xls
inst/extdata/sample1-17/offTargetsInPeakRegions.xls
inst/extdata/sample5-21/offTargetsInPeakRegions.xls
inst/extdata/sample7-23/offTargetsInPeakRegions.xls
inst/extdata/sample3-19/offTargetsInPeakRegions.xls
inst/extdata/sample2-18/offTargetsInPeakRegions.xls
inst/extdata/sample6-22/offTargetsInPeakRegions.xls
vignettes/GUIDEseq.Rnw
R/createBarcodeFasta.R R/getUsedBarcodes.R R/combineOfftargets.R R/mergePlusMinusPeaks.R R/annotateOfftargets.R R/getPeaks.R R/offTargetAnalysisOfPeakRegions.R R/GUIDEseqAnalysis.R R/GUIDEseq-internal.R R/getUniqueCleavageEvents.R man/offTargetAnalysisOfPeakRegions.Rd man/getUsedBarcodes.Rd man/peaks.gr.Rd man/getPeaks.Rd man/combineOfftargets.Rd man/mergePlusMinusPeaks.Rd man/getUniqueCleavageEvents.Rd man/GUIDEseq-package.Rd man/createBarcodeFasta.Rd man/uniqueCleavageEvents.Rd man/annotateOffTargets.Rd man/GUIDEseqAnalysis.Rd
build/vignette.rds
data/uniqueCleavageEvents.rda
data/peaks.gr.rda
GUIDEseq documentation built on Nov. 1, 2018, 2:57 a.m.