Files in GWENA

Pipeline for augmented co-expression analysis

NEWS.md README.md

NAMESPACE

LICENSE.md

DESCRIPTION

R/topology.R R/data.R R/comparison.R R/biological_integration.R R/net_and_modules.R R/netrep_functions.R R/data_preprocessing.R R/utils.R inst/doc/GWENA_guide.Rmd inst/doc/GWENA_guide.R

inst/doc/GWENA_guide.html

inst/extdata/h.all.v6.2.entrez.gmt

inst/extdata/h.all.v6.2.symbols.gmt

build/vignette.rds

tests/testthat.R tests/testthat/setup-GWENA.R tests/testthat/test-data_preprocessing.R tests/testthat/test-net_and_modules.R tests/testthat/test-biological_integration.R tests/testthat/test-comparison.R vignettes/GWENA_guide.Rmd

vignettes/figure_pipeline_schema.png

data/kuehne_traits.rda

data/kuehne_expr.rda

data/gtex_expr.rda

data/gtex_traits.rda

man/quiet.Rd man/plot_module.Rd man/build_graph_from_sq_mat.Rd man/filter_low_var.Rd man/dot-contingencyTable.Rd man/dot-check_network.Rd man/bio_enrich.Rd man/get_fit.cor.Rd man/plot_modules_phenotype.Rd man/join_gost.Rd man/associate_phenotype.Rd man/is_module.Rd man/is_gost.Rd man/matchsub.Rd man/detect_modules.Rd man/get_hub_degree.Rd man/dot-check_data_expr.Rd man/get_hub_high_co.Rd man/z_summary.Rd man/compare_conditions.Rd man/dot-check_module.Rd man/dot-cor_func_match.Rd man/get_hub_genes.Rd man/dot-check_gost.Rd man/plot_expression_profiles.Rd man/filter_RNA_seq.Rd man/kuehne_expr.Rd man/build_net.Rd man/orderAsNumeric.Rd man/gtex_traits.Rd man/is_network.Rd man/get_hub_kleinberg.Rd man/plot_modules_merge.Rd man/is_data_expr.Rd man/plot_comparison_stats.Rd man/plot_enrichment.Rd man/get_fit.expr.Rd man/gtex_expr.Rd man/kuehne_traits.Rd data-raw/gtex_expr.R data-raw/gtex_traits.R

GWENA documentation built on Feb. 17, 2021, 2:01 a.m.