dot-contingencyTable: Calculate a contigency table of module overlap between...
In GWENA: Pipeline for augmented co-expression analysis
Description
Usage
Arguments
Value
Description
Calculate a contigency table of module overlap between datasets
Usage
1
.contingencyTable(modAssignments, mods, tiNodelist)
Arguments
modAssignments
a list where the first element is the
'moduleAssignments' vector in the discovery dataset, and the second element
is the 'moduleAssignments vector in the test dataset.
mods
the 'modules' vector for the discovery dataset.
tiNodelist
a vector of node IDs in the test dataset.
Value
A list containing a contigency table, a vector of the proportion of
nodes present in the test dataset for each module, a vector containing
the number of nodes present in the test dataset for each module, a vector
of the node names present in both the discovery and test datasets, a vector
of modules that are both requested and have nodes present in the test
dataset, and the modAssignments vector containing only nodes present
in the test dataset.
GWENA documentation built on Feb. 17, 2021, 2:01 a.m.
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Description Usage Arguments Value
Description
Calculate a contigency table of module overlap between datasets
Usage
1 | .contingencyTable(modAssignments, mods, tiNodelist)
|
Arguments
modAssignments |
a list where the first element is the 'moduleAssignments' vector in the discovery dataset, and the second element is the 'moduleAssignments vector in the test dataset. |
mods |
the 'modules' vector for the discovery dataset. |
tiNodelist |
a vector of node IDs in the test dataset. |
Value
A list containing a contigency table, a vector of the proportion of
nodes present in the test dataset for each module, a vector containing
the number of nodes present in the test dataset for each module, a vector
of the node names present in both the discovery and test datasets, a vector
of modules that are both requested and have nodes present in the test
dataset, and the modAssignments vector containing only nodes present
in the test dataset.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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