plot_expression_profiles: Modules expression profiles

In GWENA: Pipeline for augmented co-expression analysis

Description

Plot expression profiles for all modules with eigengene highlighted

Usage

plot_expression_profiles(data_expr, modules, ...)

Arguments

data_expr	matrix or data.frame or SummarizedExperiment, expression data with genes as column and samples as row.
modules	vector, id (whole number or string) of modules associated to each gene.
...	additional parameters to pass to ggplot2::theme

Value

A ggplot representing expression profile and eigengene by module

Examples

df <- kuehne_expr[1:24, 1:350]
net <- build_net(df, n_threads = 1)
detection <- detect_modules(df, net$network, detailled_result = TRUE)
plot_expression_profiles(df, detection$modules)

GWENA documentation built on Feb. 17, 2021, 2:01 a.m.