GO_Module_NameR: GO enrichment for module names

Description Usage Arguments Value Examples

View source: R/Module_annotation.R

Description

GO enrichment for module names

Usage

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GO_Module_NameR(Auto_WGCNA_OUTPUT, cutoff_size = NULL)

Arguments

Auto_WGCNA_OUTPUT

object returned by GSEAGO_Builder function

cutoff_size

integer indication the GO size cut off. If NULL (default) the term with the smallest Pvalue will be returned.

Value

a data.frame listing the GO name for each module. Additionally, a table similar to the output of Query_Prep function is returned, appended with module GO names.

Examples

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GMIC_Builder_dir<-system.file("extdata", "GMIC_Builder.Rdata", 
package = "GmicR", mustWork = TRUE)
load(GMIC_Builder_dir)
GMIC_Builder<-GO_Module_NameR(GMIC_Builder, cutoff_size = 100)

GmicR documentation built on Nov. 8, 2020, 7:07 p.m.