xCell_loader: Scales and centers data by sample/row in preparation for...

Description Usage Arguments Value Examples

View source: R/Auto_WGCNA.R

Description

Scales and centers data by sample/row in preparation for discretization

Usage

1

Arguments

File

the name of the text file generated by xCell that contains the cell signature scores.

Value

xCell signatures scaled and centered by sample. For GMIC, ImmuneScore, StromaScore, and MicroenvironmentScore are removed.

Examples

1
2
3
4
file_dir<-system.file("extdata", "IRIS_xCell_sig.txt", 
package = "GmicR", mustWork = TRUE)
Xcell_sig<-xCell_loader(file_dir)
plot(Xcell_sig$Bcells)

GmicR documentation built on Nov. 8, 2020, 7:07 p.m.