GraphAT: Graph Theoretic Association Tests
Version 1.48.0

Functions and data used in Balasubramanian, et al. (2004)

AuthorR. Balasubramanian, T. LaFramboise, D. Scholtens
Bioconductor views GraphAndNetwork Network
Date of publicationNone
MaintainerThomas LaFramboise <tlaframb@hsph.harvard.edu>
LicenseLGPL
Version1.48.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GraphAT")

Popular man pages

cellcycle: Cell-Cycle Cluster Matrix
clust2Mat: Function to compute adjacency matrix of cluster graph given a...
depthmat: Matrices of depth of association for pairs of YEAST genes...
makeClustM: Make an adjacency matrix for a cluster graph
mRNAclusters: Yeast mRNA Expression Data Cluster Memberships
perms: Randomly permute edges or node labels in a graph
Phenoclusters: Yeast Gene-Knockout Fitness Data Cluster Memberships
See all...

All man pages Function index File listing

Man pages

causton: Yeast mRNA Expression Data
cellcycle: Cell-Cycle Cluster Matrix
clust2Mat: Function to compute adjacency matrix of cluster graph given a...
depthmat: Matrices of depth of association for pairs of YEAST genes...
getpvalue: Function to obtain P values from the Edge permutation and...
giaever: Yeast Gene-Knockout Fitness Data
makeClustM: Make an adjacency matrix for a cluster graph
mat2UndirG: Change graph representations
mRNAclusters: Yeast mRNA Expression Data Cluster Memberships
permPower: Function to compute estimated probability of detecting...
perms: Randomly permute edges or node labels in a graph
Phenoclusters: Yeast Gene-Knockout Fitness Data Cluster Memberships

Functions

Phenoclusters Man page
causton Man page
ccCM Man page
clust2Mat Man page Source code
depthmatBP Man page
depthmatCC Man page
depthmatMF Man page
getpvalue Man page Source code
giaever Man page
mRNAclusters Man page
makeClustM Man page Source code
mat2UndirG Man page Source code
nNamescc Man page
permEdgesM2M Man page Source code
permNodesM2M Man page Source code
permPower Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/clust2Mat.R
R/getpvalue.R
R/makeClustM.R
R/mat2UndirG.R
R/permEdgesM2M.R
R/permNodesM2M.R
R/permPower.R
data
data/Phenoclusters.rda
data/causton.rda
data/ccCM.rda
data/datalist
data/depthmatBP.rda
data/depthmatCC.rda
data/depthmatMF.rda
data/giaever.rda
data/mRNAclusters.rda
data/nNamescc.rda
man
man/Phenoclusters.Rd
man/causton.Rd
man/cellcycle.Rd
man/clust2Mat.Rd
man/depthmat.Rd
man/getpvalue.Rd
man/giaever.Rd
man/mRNAclusters.Rd
man/makeClustM.Rd
man/mat2UndirG.Rd
man/permPower.Rd
man/perms.Rd
GraphAT documentation built on May 20, 2017, 10:01 p.m.