GraphAT: Graph Theoretic Association Tests

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Functions and data used in Balasubramanian, et al. (2004)

Author
R. Balasubramanian, T. LaFramboise, D. Scholtens
Date of publication
None
Maintainer
Thomas LaFramboise <tlaframb@hsph.harvard.edu>
License
LGPL
Version
1.46.0

View on Bioconductor

Man pages

causton
Yeast mRNA Expression Data
cellcycle
Cell-Cycle Cluster Matrix
clust2Mat
Function to compute adjacency matrix of cluster graph given a...
depthmat
Matrices of depth of association for pairs of YEAST genes...
getpvalue
Function to obtain P values from the Edge permutation and...
giaever
Yeast Gene-Knockout Fitness Data
makeClustM
Make an adjacency matrix for a cluster graph
mat2UndirG
Change graph representations
mRNAclusters
Yeast mRNA Expression Data Cluster Memberships
permPower
Function to compute estimated probability of detecting...
perms
Randomly permute edges or node labels in a graph
Phenoclusters
Yeast Gene-Knockout Fitness Data Cluster Memberships

Files in this package

GraphAT/DESCRIPTION
GraphAT/NAMESPACE
GraphAT/R
GraphAT/R/clust2Mat.R
GraphAT/R/getpvalue.R
GraphAT/R/makeClustM.R
GraphAT/R/mat2UndirG.R
GraphAT/R/permEdgesM2M.R
GraphAT/R/permNodesM2M.R
GraphAT/R/permPower.R
GraphAT/data
GraphAT/data/Phenoclusters.rda
GraphAT/data/causton.rda
GraphAT/data/ccCM.rda
GraphAT/data/datalist
GraphAT/data/depthmatBP.rda
GraphAT/data/depthmatCC.rda
GraphAT/data/depthmatMF.rda
GraphAT/data/giaever.rda
GraphAT/data/mRNAclusters.rda
GraphAT/data/nNamescc.rda
GraphAT/man
GraphAT/man/Phenoclusters.Rd
GraphAT/man/causton.Rd
GraphAT/man/cellcycle.Rd
GraphAT/man/clust2Mat.Rd
GraphAT/man/depthmat.Rd
GraphAT/man/getpvalue.Rd
GraphAT/man/giaever.Rd
GraphAT/man/mRNAclusters.Rd
GraphAT/man/makeClustM.Rd
GraphAT/man/mat2UndirG.Rd
GraphAT/man/permPower.Rd
GraphAT/man/perms.Rd