Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
|Author||Florian Hahne, Steffen Durinck, Robert Ivanek, Arne Mueller, Steve Lianoglou, Ge Tan <email@example.com>, Lance Parsons <firstname.lastname@example.org>, Shraddha Pai <email@example.com>|
|Date of publication||None|
|Maintainer||Florian Hahne <firstname.lastname@example.org>|
AlignedReadTrack-class: AlignedReadTrack class and methods (NOTE: THIS IS STILL IN...
AlignmentsTrack-class: AlignmentsTrack class and methods
AnnotationTrack-class: AnnotationTrack class and methods
BiomartGeneRegionTrack-class: BiomartGeneRegionTrack class and methods
collapsing: Dynamic content based on the available resolution
CustomTrack-class: CustomTrack class and methods
datasets: Data sets
DataTrack-class: DataTrack class and methods
DisplayPars-class: DisplayPars class and method
exportTracks: Export GenomeGraph tracks to a annotation file...
GdObject-class: GdObject class and methods
GeneRegionTrack-class: GeneRegionTrack class and methods
GenomeAxisTrack-class: GenomeAxisTrack class and methods
grouping: Grouping of annotation features
HighlightTrack-class: HighlightTrack class and methods
IdeogramTrack-class: IdeogramTrack class and methods
ImageMap-class: ImageMap class and methods
NumericTrack-class: NumericTrack class and methods
OverlayTrack-class: OverlayTrack class and methods
plotTracks: The main plotting function for one or several GenomeGraph...
RangeTrack-class: RangeTrack class and methods
ReferenceTrack-class: ReferenceTrack class and methods
SequenceTrack-class: SequenceTrack class and methods
settings: Setting display parameters to control the look and feel of...
StackedTrack-class: StackedTrack class and methods
UcscTrack: Meta-constructor for GenomeGraph tracks fetched directly from...