grouping: Grouping of annotation features
In Gviz: Plotting data and annotation information along genomic coordinates
Description
Details
Author(s)
See Also
Description
Many annotation tracks are actually composed of a number of grouped
sub-features, for instance exons in a gene model. This man page
highlights the use of grouping information to build informative
annotation plots.
Details
All track objects that inherit from class
AnnotationTrack support the grouping feature. The
information is usually passed on to the constructor function (for
AnnotationTrack via the groups argument and for
GeneRegionTrack objects via the exon
argument) or automatically downloaded from an online annotation
repository (BiomartGeneRegionTrack). Group
membership is specified by a factor vector with as many items as there
are annotation items in the track (i.e., the value of
length(track). Upon plotting, the grouped annotation features
are displayed together and will not be separated in the stacking of
track items.
Author(s)
Florian Hahne
See Also
Gviz documentation built on March 16, 2021, 6:01 p.m.
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Description Details Author(s) See Also
Description
Many annotation tracks are actually composed of a number of grouped sub-features, for instance exons in a gene model. This man page highlights the use of grouping information to build informative annotation plots.
Details
All track objects that inherit from class
AnnotationTrack support the grouping feature. The
information is usually passed on to the constructor function (for
AnnotationTrack via the groups argument and for
GeneRegionTrack objects via the exon
argument) or automatically downloaded from an online annotation
repository (BiomartGeneRegionTrack). Group
membership is specified by a factor vector with as many items as there
are annotation items in the track (i.e., the value of
length(track). Upon plotting, the grouped annotation features
are displayed together and will not be separated in the stacking of
track items.
Author(s)
Florian Hahne
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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