Description Usage Arguments Details Value Author(s) Examples
This function is still a bit experimental. So far only BED export is supported.
1 | exportTracks(tracks, range, chromosome, file)
|
tracks |
A list of annotation track objects to be exported into a single BED file. |
range |
A numeric vector or length 2. The genomic range to display when opening the file in a browser. |
chromosome |
The chromosome to display when opening the file in a browser. |
file |
Character, the path to the file to write into. |
FIXME: Need to support WIG exports as well...
The function is called for its side effect of writing to a file.
Florian Hahne
1 2 3 4 | ## export AnnotationTrack to BED file
at <- AnnotationTrack(start=seq(1,10), width=1, chromosome="chr1")
exportTracks(list(at), range=c(1, 10), chromosome="chr1",
file=paste0(tempfile(),".bed"))
|
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