HEM: Heterogeneous error model for identification of differentially expressed genes under multiple conditions

This package fits heterogeneous error models for analysis of microarray data

AuthorHyungJun Cho <hcho@virginia.edu> and Jae K. Lee <jaeklee@virginia.edu>
Date of publicationNone
MaintainerHyungJun Cho <hcho@virginia.edu>
LicenseGPL (>= 2)
Version1.46.0
http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/

View on Bioconductor

Man pages

am.tran: AM transformation for LPE

am.tran.half: AM transformation for LPE

base.ASE.Olig: Baseline ASE estimation for oligonucleotide arrays

base.error.Olig: Baseline error estimation for oligonucleotide arrays

base.error.Olig.quanOnly: Baseline error estimation for oligonucleotide arrays

base.PSE.Olig: Baseline PSE estimation for oligonucleotide arrays

boot.base.ASE.Olig: Baseline error bootstrap estimation for oligonucleotide...

boot.base.error.Olig: Baseline error bootstrap estimation for oligonucleotide...

boot.base.PSE.Olig: Baseline error bootstrap estimation for oligonucleotide...

fixbound.predict.smooth.spline: Prediction using smoothing spine

hem: Heterogeneous Error Model for Identification of Differential...

hem.eb.prior: Empirical Bayes (EB) Prior Specification

hem.fdr: FDR Evaluation

hem.null.no: Generation of null data

hem.null.one: Generation of null data

hem.null.two: Generation of null data

hem.preproc: Preprocessing

mubcp: Gene expression data for mouse B cell development

nonpar.error.Olig: Baseline error nonparametric estimation for oligonucleotide...

nonpar.no.error.Olig: Baseline error nonparametric estimation for oligonucleotide...

nonpar.rep.error.Olig: Baseline error nonparametric estimation for oligonucleotide...

par.error.Olig: Baseline error parametric estimation for oligonucleotide...

par.no.error.Olig: Baseline error parametric estimation for oligonucleotide...

par.rep.error.Olig: Baseline error parametric estimation for oligonucleotide...

pbrain: Gene expression data for primate brains

permut: Permutation

quant.norm: Quantile normalization

quant.normal: Normalization

quant.normal2: Normalization

quant.normalize: Quantile normalization

remove.sig.genes: Remove significant genes

Functions

am.tran Man page
am.tran.half Man page
base.ASE.Olig Man page
base.error.Olig Man page
base.error.Olig.quanOnly Man page
base.PSE.Olig Man page
boot.base.ASE.Olig Man page
boot.base.error.Olig Man page
boot.base.PSE.Olig Man page
fixbound.predict.smooth.spline Man page
hem Man page
hem.eb.prior Man page
hem.fdr Man page
hem.null.no Man page
hem.null.one Man page
hem.null.two Man page
hem.preproc Man page
mubcp Man page
nonpar.error.Olig Man page
nonpar.no.error.Olig Man page
nonpar.rep.error.Olig Man page
par.error.Olig Man page
par.no.error.Olig Man page
par.rep.error.Olig Man page
pbrain Man page
permut Man page
quant.norm Man page
quant.normal Man page
quant.normal2 Man page
quant.normalize Man page
remove.sig.genes Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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