Files in HiTC
High Throughput Chromosome Conformation Capture analysis
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/Nora_5C.RData
R/mapC.R
R/binningC.R
R/tads.R
R/qualityControl.R
R/pca.R
R/AllGenerics.R
R/normalize_5C.R
R/normalize_hiC.R
R/export.R
R/import.R
R/HTCexp-class.R
R/mapC_tracks.R
R/deprecated.R
R/HTClist-class.R
vignettes/HiTC.bib
vignettes/HiTC_memory_usage.png
vignettes/HiC_analysis.Rnw
vignettes/HiTC.Rnw
man/removeIntervals.Rd
man/HTClist-class.Rd
man/directionalityIndex.Rd
man/import.my5C.Rd
man/mapC.Rd
man/setGenomicFeatures.Rd
man/CQC.Rd
man/discretize.Rd
man/getAnnotatedRestrictionSites.Rd
man/getRestrictionFragmentsPerChromosome.Rd
man/getExpectedCounts.Rd
man/importC.Rd
man/normICE.Rd
man/export.my5C.Rd
man/setIntervalScale.Rd
man/Nora_5C.Rd
man/pca.hic.Rd
man/HiTC-internal.Rd
man/binningC.Rd
man/HTCexp-class.Rd
man/getPearsonMap.Rd
man/extractRegion.Rd
man/normLGF.Rd
man/exportC.Rd
man/intervalsDist.Rd
inst/CITATION
inst/doc/HiTC.pdf
inst/doc/HiC_analysis.R
inst/doc/HiC_analysis.Rnw
inst/doc/HiTC.R
inst/doc/HiTC.Rnw
inst/doc/HiC_analysis.pdf
inst/extdata/HIC_gm06690_chr13_chr13_1000000_obs.txt
inst/extdata/HIC_gm06690_chr12_chr12_1000000_obs.txt
inst/extdata/HIC_gm06690_chr12_chr14_1000000_obs.txt
inst/extdata/refseq_mm9_chrX_98831149_103425150.bed
inst/extdata/HIC_gm06690_chr13_chr14_1000000_obs.txt
inst/extdata/CTCF_chrX_98892125_102969775.bed
inst/extdata/HIC_gm06690_chr12_chr13_1000000_obs.txt
inst/extdata/HIC_gm06690_chr14_chr14_1000000_obs.txt
