export.my5C: Export 'HTCexp' object to my5C website format

Description Usage Arguments Details Author(s) See Also Examples

View source: R/export.R

Description

Export HTCexp object to my5C website format

Usage

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export.my5C(x, file, genome="mm9", per.chromosome=FALSE)

Arguments

x

object that inherits from class HTCexp

file

character; the prefix of the output file

genome

The genome version. This information is only used for the 'mat' export format. See details

per.chromosome

logical; export each contact maps in a different file (i.e one per chromosome pair)

Details

A tab-delimited matrix file is generated with the row and colnames defined as follow as in the my5C web tool :
REV_2|mm9|chrX:98831149-98834145

Author(s)

N. Servant

See Also

exportC

Examples

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## Not run: 
data(Nora_5C)

## Data binning
E14.bin<-binningC(E14$chrXchrX)

## Export the new intervals definition
export.my5C(E14.bin, file="E14my5C")

## End(Not run)

HiTC documentation built on Nov. 8, 2020, 8:27 p.m.