discretize: Transform matrix of counts data into discrete matrix

In HiTC: High Throughput Chromosome Conformation Capture analysis

Description

Transform matrix of counts data into discrete matrix

Usage

discretize(x, nb.lev=4, quant=TRUE)

Arguments

x	data matrix
nb.lev	number of discretization level
quant	logical; use quantile distribution or split data into equals 'nb.lev' levels

Value

A discrete matrix

Author(s)

N. Servant

See Also

quantile

Examples

## Not run: 
data(Nora_5C)

## Data binning
E14bin<-binningC(E14$chrXchrX)

## Discretize matrix
dismat<-discretize(intdata(E14bin))
mapC(dismat)

## End(Not run)

HiTC documentation built on Nov. 8, 2020, 8:27 p.m.