Files in HiTC
High Throughput Chromosome Conformation Capture analysis

.BBSoptions
DESCRIPTION
NAMESPACE
NEWS
R
R/AllGenerics.R R/HTCexp-class.R R/HTClist-class.R R/binningC.R R/deprecated.R R/export.R R/import.R R/mapC.R R/mapC_tracks.R R/normalize_5C.R R/normalize_hiC.R R/pca.R R/qualityControl.R R/tads.R
build
build/vignette.rds
data
data/Nora_5C.RData
inst
inst/CITATION
inst/doc
inst/doc/HiC_analysis.R
inst/doc/HiC_analysis.Rnw
inst/doc/HiC_analysis.pdf inst/doc/HiTC.R
inst/doc/HiTC.Rnw
inst/doc/HiTC.pdf
inst/extdata
inst/extdata/CTCF_chrX_98892125_102969775.bed
inst/extdata/HIC_gm06690_chr12_chr12_1000000_obs.txt
inst/extdata/HIC_gm06690_chr12_chr13_1000000_obs.txt
inst/extdata/HIC_gm06690_chr12_chr14_1000000_obs.txt
inst/extdata/HIC_gm06690_chr13_chr13_1000000_obs.txt
inst/extdata/HIC_gm06690_chr13_chr14_1000000_obs.txt
inst/extdata/HIC_gm06690_chr14_chr14_1000000_obs.txt
inst/extdata/refseq_mm9_chrX_98831149_103425150.bed
man
man/CQC.Rd man/HTCexp-class.Rd man/HTClist-class.Rd man/HiTC-internal.Rd man/Nora_5C.Rd man/binningC.Rd man/directionalityIndex.Rd man/discretize.Rd man/export.my5C.Rd man/exportC.Rd man/extractRegion.Rd man/getAnnotatedRestrictionSites.Rd man/getExpectedCounts.Rd man/getPearsonMap.Rd man/getRestrictionFragmentsPerChromosome.Rd man/import.my5C.Rd man/importC.Rd man/intervalsDist.Rd man/mapC.Rd man/normICE.Rd man/normLGF.Rd man/pca.hic.Rd man/removeIntervals.Rd man/setGenomicFeatures.Rd man/setIntervalScale.Rd
vignettes
vignettes/HiC_analysis.Rnw
vignettes/HiTC.Rnw
vignettes/HiTC.bib
vignettes/HiTC_memory_usage.png
HiTC documentation built on May 31, 2017, 11:36 a.m.