directionalityIndex: Directionality index calculation
In HiTC: High Throughput Chromosome Conformation Capture analysis
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Calculate the directionality index as proposed by Dixon et al. 2012
Usage
1
directionalityIndex(x, winup = 2e+06, windown = 2e+06)
Arguments
x
HTClist object
winup
size of upstream window
windown
size of downstrean window
Details
Calculate the directionality index as proposed by Dixon et al. This
index is then used to call topological domains in Hi-C/5C data.
Value
A numeric vector
Author(s)
N. Servant
See Also
Examples
1
2
3
4
require(HiCDataHumanIMR90)
data(Dixon2012_IMR90)
hox <- extractRegion(hic_imr90_40$chr6chr6, chr="chr6", from=50e6, to=58e6)
di<-directionalityIndex(hox)
HiTC documentation built on Nov. 8, 2020, 8:27 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Calculate the directionality index as proposed by Dixon et al. 2012
Usage
1 | directionalityIndex(x, winup = 2e+06, windown = 2e+06)
|
Arguments
x |
|
winup |
size of upstream window |
windown |
size of downstrean window |
Details
Calculate the directionality index as proposed by Dixon et al. This index is then used to call topological domains in Hi-C/5C data.
Value
A numeric vector
Author(s)
N. Servant
See Also
Examples
1 2 3 4 | require(HiCDataHumanIMR90)
data(Dixon2012_IMR90)
hox <- extractRegion(hic_imr90_40$chr6chr6, chr="chr6", from=50e6, to=58e6)
di<-directionalityIndex(hox)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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