modelRatesNF: Launch the modeling process without imposing sigmoid/impulse...
In INSPEcT: Modeling RNA synthesis, processing and degradation with RNA-seq data

Description Usage Arguments Value Examples

This method compute confidence intervals for the rates of synthesis, degradation and processing estimated by newINSPEcT that will be used to estimate the variability of each rate in ratePvals method.

modelRatesNF(object, BPPARAM = SerialParam())

## S4 method for signature 'INSPEcT'
modelRatesNF(object, BPPARAM = SerialParam())

`object`	An object of class INSPEcT
`BPPARAM`	Parallelization parameters for bplapply. By default SerialParam()

An object of class INSPEcT with modeled rates

if( Sys.info()["sysname"] != "Windows" ) {
	nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
	## models removal
	nascentInspObjThreeGenes <- removeModel(nascentInspObj10[1:3])
	nascentInspObjThreeGenes <- modelRatesNF(nascentInspObjThreeGenes, 
	  BPPARAM=SerialParam())
	## view modeled synthesis rates
	viewModelRates(nascentInspObjThreeGenes, 'synthesis')
	## view gene classes
	geneClass(nascentInspObjThreeGenes)
}