modelRatesNF: Launch the modeling process without imposing sigmoid/impulse...

Description Usage Arguments Value Examples

Description

This method compute confidence intervals for the rates of synthesis, degradation and processing estimated by newINSPEcT that will be used to estimate the variability of each rate in ratePvals method.

Usage

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modelRatesNF(object, BPPARAM = SerialParam())

## S4 method for signature 'INSPEcT'
modelRatesNF(object, BPPARAM = SerialParam())

Arguments

object

An object of class INSPEcT

BPPARAM

Parallelization parameters for bplapply. By default SerialParam()

Value

An object of class INSPEcT with modeled rates

Examples

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if( Sys.info()["sysname"] != "Windows" ) {
	nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
	## models removal
	nascentInspObjThreeGenes <- removeModel(nascentInspObj10[1:3])
	nascentInspObjThreeGenes <- modelRatesNF(nascentInspObjThreeGenes, 
	  BPPARAM=SerialParam())
	## view modeled synthesis rates
	viewModelRates(nascentInspObjThreeGenes, 'synthesis')
	## view gene classes
	geneClass(nascentInspObjThreeGenes)
}

INSPEcT documentation built on April 29, 2020, 5:19 a.m.