Files in INSPEcT
Analysis of 4sU-seq and RNA-seq time-course data

DESCRIPTION
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/INSPEcT.Rnw
inst/doc/INSPEcT.R inst/doc/INSPEcT.pdf
inst/extdata/totalRNA_0h.bam
inst/extdata/4sURNA_0h.bam
vignettes/INSPEcT.Rnw
vignettes/pipeline.png
R/chisqtest-methods.R R/modelRates-methods.R R/Extract-methods.R R/makeSimDataset-methods.R R/inHeatmap-methods.R R/newINSPEcT-functions.R R/sfPlot-methods.R R/ratePvals-methods.R R/makeSimModel-methods.R R/makeRPKMs-functions.R R/AllClasses.R R/modelingParams-methods.R R/dataDocumentation.R R/ratesFirstGuess-methods.R R/logLik-methods.R R/plotGene-methods.R R/steady-state-methods.R R/geneClass-methods.R R/makeModelRates-methods.R R/rocThresholds-methods.R R/AllInternalFunctions.R R/AllGenerics.R R/testingParams-methods.R R/show-methods.R R/viewModelRates-methods.R R/rocCurve-methods.R R/getModel-methods.R man/labeledSF.Rd man/geneClass.Rd man/rocThresholds.Rd man/makeSimDataset.Rd man/logLik.Rd man/tpts.Rd man/nTpts.Rd man/INSPEcT-class.Rd man/makeModelRates.Rd man/Extract.Rd man/chisqtest.Rd man/simData3rep.Rd man/rocCurve.Rd man/totalSF.Rd man/testingParams.Rd man/simData1rep.Rd man/INSPEcT.Rd man/INSPEcT_model-class.Rd man/chisqmodel.Rd man/makeRPKMs.Rd man/ratesFirstGuessVar.Rd man/split.Rd man/simRates.Rd man/featureNames-INSPEcT-method.Rd man/plotMA.Rd man/getModel.Rd man/compareSteady.Rd man/combine.Rd man/sfPlot.Rd man/makeSimModel.Rd man/newINSPEcT.Rd man/inHeatmap.Rd man/UCSC_mm9_genes_exons.Rd man/nGenes.Rd man/AIC-INSPEcT-method.Rd man/UCSC_mm9_genes_introns.Rd man/modelingParams.Rd man/ratesFirstGuess.Rd man/ratePvals.Rd man/plotGene.Rd man/INSPEcT_diffsteady-class.Rd man/viewModelRates.Rd man/modelRates.Rd man/rpkms.Rd man/removeModel.Rd man/mycerIds10.Rd man/dim-INSPEcT-method.Rd
build/vignette.rds
data/mycerIds10.RData
data/rpkms.RData
data/simData1rep.RData
data/simData3rep_2.RData
data/simData3rep.RData
data/simRates.RData
data/datalist
INSPEcT documentation built on May 2, 2018, 4:22 a.m.