quantifyExpressionsFromTrAbundance: Given introns and exons abundances (for example RPKMs) this...

In INSPEcT: Modeling RNA synthesis, processing and degradation with RNA-seq data

Description

Given introns and exons abundances (for example RPKMs) this method returns their variances evaluated thorugh plgem.

Usage

quantifyExpressionsFromTrAbundance(
  trAbundaces,
  experimentalDesign,
  varSamplingCondition = NULL,
  simulatedData = FALSE
)

Arguments

trAbundaces	A a list with elements "exonsAbundances" and "intronsAbundances".
experimentalDesign	A numerical which reports the desing of the experiment in terms of time points and replicates. The time points must be ordered according to the columns of the count matrices submitted for the analysis; these labels define conditions and replicates.
varSamplingCondition	A character reporting which experimental condition should be used to sample the variance if DESeq2 = FALSE.
simulatedData	A boolean which is TRUE if the data under analysis are simulated.

Value

A list containing RPKMs and associated variances for exons and introns.

INSPEcT documentation built on Nov. 8, 2020, 6:49 p.m.