Description Usage Arguments Value See Also Examples

A method to get the parameters used for modeling rates and
concentrations by the method `modelRates`

1 2 3 4 | ```
modelingParams(object)
## S4 method for signature 'INSPEcT'
modelingParams(object)
``` |

`object` |
An object of class INSPEcT |

List of parameters and their values

estimateRatesWith Either "int" or "der". With "int" the degradation and processing rates are estimated integrating the system between one time point and the following. With "der" degradation and processing rates are estimated using the derivative of total and pre mRNA.

useSigmoidFun A logical, whether to choose between sigmoid and impulse function to fit rates and concentrations. In case not, always impulse function is used.

testOnSmooth A logical, wheter models should be tested on smoothed pre-mRNA, total mRNA and eventually synthesis rates or not.

nInit number of optimization to find the best functional representation of each rate

nIter number of max iteration during optimization

Dmin lower bondary for degradation rates in the NoNascent mode

Dmax upper bondary for degradation rates in the NoNascent mode

seed A numeric, indicatindg the seed set for reproducible results.

1 2 | ```
nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
modelingParams(nascentInspObj10)
``` |

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