A method to get the parameters used for modeling rates and
concentrations by the method
1 2 3 4
An object of class INSPEcT
List of parameters and their values
estimateRatesWith Either "int" or "der". With "int" the degradation and processing rates are estimated integrating the system between one time point and the following. With "der" degradation and processing rates are estimated using the derivative of total and pre mRNA.
useSigmoidFun A logical, whether to choose between sigmoid and impulse function to fit rates and concentrations. In case not, always impulse function is used.
testOnSmooth A logical, wheter models should be tested on smoothed pre-mRNA, total mRNA and eventually synthesis rates or not.
nInit number of optimization to find the best functional representation of each rate
nIter number of max iteration during optimization
Dmin lower bondary for degradation rates in the NoNascent mode
Dmax upper bondary for degradation rates in the NoNascent mode
seed A numeric, indicatindg the seed set for reproducible results.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.