API for INSPEcT
Analysis of 4sU-seq and RNA-seq time-course data

Global functions
AIC,INSPEcT-method Man page
AIC,INSPEcT_model-method Man page
AIC-INSPEcT-method Man page
DimpulseModel Source code
DsigmoidModel Source code
Extract Man page
INSPEcT Man page
INSPEcT-class Man page
INSPEcT-package Man page
INSPEcT_diffsteady-class Man page
INSPEcT_model-class Man page
UCSC_mm9_genes_exons Man page
UCSC_mm9_genes_introns Man page
[,INSPEcT,ANY,ANY,ANY-method Man page
[,INSPEcT_model,ANY,ANY,ANY-method Man page
bestModel Source code
brown_method Source code
brown_method_mask Source code
chisq Source code
chisqmodel Man page
chisqmodel,INSPEcT-method Man page
chisqmodel,INSPEcT_model-method Man page
chisqtest Man page
chisqtest,INSPEcT-method Man page
chisqtest,INSPEcT_model-method Man page
chooseModel Source code
combine Man page
combine,INSPEcT,INSPEcT-method Man page
compareSteady Man page
compareSteady,INSPEcT,INSPEcT-method Man page
constantModel Source code
degradation Man page
degradation,INSPEcT_diffsteady-method Man page
dim,INSPEcT-method Man page
emptyGene Source code
featureNames,INSPEcT-method Man page
featureNames<-,INSPEcT-method Man page
find_tt_par Source code
geneClass Man page
geneClass,INSPEcT-method Man page
geneClass,INSPEcT_model-method Man page
getModel Man page
getModel,INSPEcT-method Man page
getModel<- Man page
getModel<-,INSPEcT-method Man page
getRatesAndConcentrationsFromRpkms Source code
inHeatmap Man page
inHeatmap,INSPEcT-method Man page
labeledSF Man page
labeledSF,INSPEcT-method Man page
llrtests Man page
llrtests,INSPEcT-method Man page
llrtests,INSPEcT_model-method Man page
llrtests<- Man page
llrtests<-,INSPEcT-method Man page
llrtests<-,INSPEcT_model-method Man page
logLik Man page
logLik,INSPEcT-method Man page
logLik,INSPEcT_model-method Man page
logLikRatioTest Source code
logLikelihood Source code
makeEmptyModel Source code
makeEmptySimpleModel Source code
makeModel Source code
makeModelRates Man page
makeModelRates,INSPEcT-method Man page
makeModelRates,INSPEcT_model-method Man page
makeRPKMs Man page Source code
makeSimData Source code
makeSimDataset Man page
makeSimDataset,INSPEcT_model-method Man page
makeSimModel Man page
makeSimModel,INSPEcT-method Man page
makeSimpleModel Source code
modelRates Man page
modelRates,INSPEcT-method Man page
modelSelection Man page
modelSelection,INSPEcT-method Man page
modelSelection,INSPEcT_model-method Man page
modelSelection<- Man page
modelSelection<-,INSPEcT-method Man page
modelSelection<-,INSPEcT_model-method Man page
modelingParams Man page
modelingParams,INSPEcT-method Man page
modelingParams<- Man page
modelingParams<-,INSPEcT-method Man page
mpulseModel Source code
mycerIds10 Man page
nGenes Man page
nGenes,INSPEcT-method Man page
nTpts Man page
nTpts,INSPEcT-method Man page
newINSPEcT Man page Source code
newPointer Source code
nspect.engine Source code
plotGene Man page
plotGene,INSPEcT-method Man page
plotMA Man page
plotMA,INSPEcT_diffsteady-method Man page
polynomialModel Source code
processing Man page
processing,INSPEcT_diffsteady-method Man page
ratePvals Man page
ratePvals,INSPEcT-method Man page
ratePvals,INSPEcT_model-method Man page
ratesFirstGuess Man page
ratesFirstGuess,INSPEcT-method Man page
ratesFirstGuessVar Man page
ratesFirstGuessVar,INSPEcT-method Man page
removeModel Man page
removeModel,INSPEcT-method Man page
rocCurve Man page
rocCurve,INSPEcT_model,INSPEcT-method Man page
rocCurve,INSPEcT_model,INSPEcT_model-method Man page
rocThresholds Man page
rocThresholds,INSPEcT_model,INSPEcT-method Man page
rocThresholds,INSPEcT_model,INSPEcT_model-method Man page
rowVars Source code
rowVars2 Source code
rpkms Man page
rxnrate Source code
rxnrateSimple Source code
sfPlot Man page
sfPlot,INSPEcT-method Man page
show,INSPEcT-method Man page
show,INSPEcT_diffsteady-method Man page
show,INSPEcT_model-method Man page
sigmoidModel Source code
simData1rep Man page
simData3rep Man page
simRates Man page
split Man page
split,INSPEcT,ANY-method Man page
synthesis Man page
synthesis,INSPEcT_diffsteady-method Man page
testingParams Man page
thresholds Man page
thresholds,INSPEcT-method Man page
thresholds,INSPEcT_model-method Man page
thresholds<- Man page
thresholds<-,INSPEcT-method Man page
thresholds<-,INSPEcT_model-method Man page
time_transf Source code
totalSF Man page
totalSF,INSPEcT-method Man page
tpts Man page
tpts,INSPEcT-method Man page
viewModelRates Man page
viewModelRates,INSPEcT-method Man page
which.quantile Source code
INSPEcT documentation built on Nov. 17, 2017, 9:13 a.m.