ratesFirstGuess: Retrieve pre-modeling rates and concentrations

In INSPEcT: Modeling RNA synthesis, processing and degradation with RNA-seq data

Description

This method allow to access to the estimated synthesis, degradation, processing rates and pre mRNA and total mRNA concentrations the way they were calculated by the constructor function newINSPEcT.

Usage

ratesFirstGuess(object, feature)

## S4 method for signature 'INSPEcT'
ratesFirstGuess(object, feature)

Arguments

object	An object of class INSPEcT
feature	A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations

Value

A numeric matrix containing the values for the selected feature

See Also

newINSPEcT, ratesFirstGuessVar

Examples

nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))

ratesFirstGuess(nascentInspObj10, 'total')
ratesFirstGuess(nascentInspObj10, 'preMRNA')
ratesFirstGuess(nascentInspObj10, 'synthesis')

INSPEcT documentation built on Nov. 8, 2020, 6:49 p.m.