Files in IRanges
Foundation of integer range manipulation in Bioconductor
NEWS
NAMESPACE
TODO
DESCRIPTION
README.md
tests/run_unitTests.R
src/NCList.c
src/Ranges_class.c
src/SimpleIRangesList_class.c
src/extractListFragments.c
src/Grouping_class.c
src/IPosRanges_comparison.c
src/CompressedIRangesList_class.c
src/IRanges.h
src/IRanges_constructor.c
src/CompressedList_class.c
src/RleViews_utils.c
src/CompressedAtomicList_utils.c
src/S4Vectors_stubs.c
src/coverage_methods.c
src/R_init_IRanges.c
src/inter_range_methods.c
src/IRanges_class.c
R/ViewsList-class.R
R/IRanges-constructor.R
R/cbind-Rle-methods.R
R/AtomicList-class.R
R/extractListFragments.R
R/nearest-methods.R
R/MaskCollection-class.R
R/RleViews-utils.R
R/CompressedList-class.R
R/CompressedRangesList-class.R
R/Vector-class-leftovers.R
R/SimpleGrouping-class.R
R/DataFrameList-class.R
R/Views-class.R
R/IPosRanges-comparison.R
R/read.Mask.R
R/IRangesList-class.R
R/subsetting-utils.R
R/IPos-class.R
R/RleViewsList-utils.R
R/Hits-class-leftovers.R
R/IRanges-utils.R
R/RangedSelection-class.R
R/intra-range-methods.R
R/reverse-methods.R
R/Ranges-and-RangesList-classes.R
R/tile-methods.R
R/CompressedDataFrameList-class.R
R/Grouping-class.R
R/seqapply.R
R/Rle-class-leftovers.R
R/IRanges-class.R
R/NCList-class.R
R/multisplit.R
R/cvg-methods.R
R/findOverlaps-methods.R
R/extractList.R
R/inter-range-methods.R
R/setops-methods.R
R/CompressedAtomicList-class.R
R/windows-methods.R
R/AtomicList-utils.R
R/DataFrameList-utils.R
R/range-squeezers.R
R/IPosList-class.R
R/CompressedGrouping-class.R
R/slice-methods.R
R/CompressedList-comparison.R
R/coverage-methods.R
R/zzz.R
R/CompressedHitsList-class.R
R/IntegerRangesList-class.R
R/IPosRanges-class.R
R/RleViews-class.R
R/RleViewsList-class.R
man/read.Mask.Rd
man/DataFrameList-class.Rd
man/ViewsList-class.Rd
man/view-summarization-methods.Rd
man/slice-methods.Rd
man/coverage-methods.Rd
man/intra-range-methods.Rd
man/setops-methods.Rd
man/AtomicList-class.Rd
man/inter-range-methods.Rd
man/IRangesList-class.Rd
man/CompressedList-class.Rd
man/IPosRanges-comparison.Rd
man/findOverlaps-methods.Rd
man/RleViewsList-class.Rd
man/RangedSelection-class.Rd
man/RleViews-class.Rd
man/IPosRanges-class.Rd
man/IPos-class.Rd
man/Rle-class-leftovers.Rd
man/MaskCollection-class.Rd
man/Grouping-class.Rd
man/IntegerRangesList-class.Rd
man/NCList-class.Rd
man/CompressedHitsList-class.Rd
man/extractList.Rd
man/Views-class.Rd
man/IRanges-utils.Rd
man/IntegerRanges-class.Rd
man/multisplit.Rd
man/IRanges-internals.Rd
man/seqapply.Rd
man/range-squeezers.Rd
man/Hits-class-leftovers.Rd
man/extractListFragments.Rd
man/IRanges-class.Rd
man/nearest-methods.Rd
man/reverse-methods.Rd
man/AtomicList-utils.Rd
man/Vector-class-leftovers.Rd
man/IRanges-constructor.Rd
inst/CITATION
inst/unitTests/test_setops-methods.R
inst/unitTests/test_splitListElements.R
inst/unitTests/test_IRanges-class.R
inst/unitTests/test_IPos-class.R
inst/unitTests/test_AtomicList-utils.R
inst/unitTests/test_coverage-methods.R
inst/unitTests/test_intra-range-methods.R
inst/unitTests/test_IRangesList-class.R
inst/unitTests/test_RleViewsList.R
inst/unitTests/test_Grouping-class.R
inst/unitTests/test_inter-range-methods.R
inst/unitTests/test_Ranges-comparison.R
inst/unitTests/test_HitsList.R
inst/unitTests/test_NCList-class.R
inst/unitTests/test_RleViews.R
inst/unitTests/test_split.R
inst/unitTests/test_findOverlaps-methods.R
inst/unitTests/test_nearest-methods.R
inst/unitTests/test_seqapply.R
inst/unitTests/test_tile-methods.R
inst/unitTests/test_DataFrameList.R
inst/unitTests/test_extractList.R
inst/unitTests/test_DataFrame-utils.R
inst/unitTests/test_AtomicList-class.R
inst/extdata/ce2chrM.fa.out
inst/extdata/hs_b36v3_chrY.agp
inst/extdata/hg18liftAll.lft
inst/extdata/ce2chrM.bed
inst/include/IRanges_defines.h
inst/include/_IRanges_stubs.c
inst/include/IRanges_interface.h
inst/doc/IRangesOverview.pdf
inst/doc/IRangesOverview.Rnw
inst/doc/IRangesOverview.R
build/vignette.rds
vignettes/IRangesOverview.Rnw
